Coppens d’Eeckenbrugge G, Lacape J-M (2014) Distribution and Differentiation of Wild, Feral, and Cultivated Populations of Perennial Upland Cotton (Gossypium hirsutum L.) in Mesoamerica and the Caribbean. PLoS ONE, 9, e107458.
 
Abstract
Perennial forms of Gossypium hirsutum are classified under 
seven races. Five Mesoamerican races would have been derived from the 
wild race ‘yucatanense’ from northern Yucatán. ‘Marie-Galante’, the main
 race in the Caribbean, would have developed from introgression with G. barbadense.
 The racial status of coastal populations from the Caribbean has not 
been clearly defined. We combined Ecological Niche Modeling with an 
analysis of SSR marker diversity, to elucidate the relationships among 
cultivated, feral and wild populations of perennial cottons. Out of 954 
records of occurrence in Mesoamerica and the Caribbean, 630 were 
classified into four categories cultivated, feral (disturbed and 
secondary habitats), wild/feral (protected habitats), and truly wild 
cotton (TWC) populations. The widely distributed three first categories 
cannot be differentiated on ecological grounds, indicating they mostly 
belong to the domesticated pool. In contrast, TWC are restricted to the 
driest and hottest littoral habitats, in northern Yucatán and in the 
Caribbean (from Venezuela to Florida), as confirmed by their climatic 
envelope in the factorial analysis. Extrapolating this TWC climatic 
model to South America and the Pacific Ocean points towards places where
 other wild representatives of tetraploid Gossypium species 
have been encountered. The genetic analysis sample comprised 42 TWC 
accessions from 12 sites and 68 feral accessions from 18 sites; at nine 
sites, wild and feral accessions were collected in close vicinity. 
Principal coordinate analysis, neighbor joining, and STRUCTURE 
consistently showed a primary divergence between TWC and feral cottons, 
and a secondary divergence separating ‘Marie-Galante’ from all other 
feral accessions. This strong genetic structure contrasts strikingly 
with the absence of geographic differentiation. Our results show that 
TWC populations of Mesoamerica and the Caribbean constitute a homogenous
 gene pool. Furthermore, the relatively low genetic divergence between 
the Mesoamerican and Caribbean domesticated pools supports the 
hypothesis of domestication of G. hirsutum in northern Yucatán.  
 
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